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Fix: Safety Scanner (msert.exe) side-by-side configuration is incorrect

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Microsoft has developed a few security tools aimed to help users deal with malware on their Windows computers. One such tool is Safety Scanner (msert.exe) – the executable name stands for Microsoft Support Emergency Response Tool.

Some users have reported receiving the “side-by-side configuration is incorrect”  error when trying to run the security utility on their PCs. The problem can arise for a few reasons. Here are some of the most common culprits:

  • Windows Smart Screen is preventing the scanner from running on your system.
  • Problem is caused by a missing C++ redistributable package.
  • The executable of Safety Scanner has expired and needs to be redownloaded.
  • A 3rd party software is preventing the scanner from starting.
  • Malware has hijacked msert.exe after it expired – only applicable if you downloaded the Safety Scanner over 10 days before starting to get the error.

What is Safety Scanner

The simple explanation of Safety Scanner (msert.exe) is quite straightforward – it’s a scan tool that users can download to identify and remove any malware residing on their computers. Safety Scanner will work on every Windows version from Windows XP to Windows 10, with every architecture (32 bit or 64 bit).

As opposed to most of the others security tools that Microsoft provides, Safety Scanner will not start automatically – it needs to be manually downloaded and triggered. Even more, msert.exe is set to expire exactly 10 days after you download it. This is a security step to ensure that users are scanning with the latest version.

But keep in mind that this tool is not meant to replace your antimalware product. Think of it as a specialized tool that is only used in emergency situations. Safety Scanner will look for very specific threats, often times related to compromised OS files or Windows updates that are prevented from installing.

Security concerns

Even though msert.exe is a Microsoft-developed security tool, it’s not an integrated part of the Windows OS. The file is digitally signed by Microsoft, but it’s not classified as a core process. However, the executable has the ability to monitor applications and affect the performance of other applications.

For these reasons, some security researchers have even classified the executable as dangerous because of it’s potential get hijacked by malware. There are confirmed cases of Trojans camouflaging as the Msert executable and using it’s enhanced privileges for their ill-intended practices. Luckily, this is only known to happen after the program expires (10 days after being downloaded). Users are encouraged to delete the msert.exe when Safety Scanner is no longer used.

Fixing the “side-by-side configuration is incorrect” error

If you’re seeing the “side-by-side configuration is incorrect” error when opening the Msert executable, there are a few fixes known to remedy the issue. Below you have a collection of methods that were successfully used to bypass the error and perform a scan with Safety Scanner.

Note: Please follow the solutions in order until you find a fix that is effective.

Method 1: Re-download the Safety Scanner executable

As we’ve already mentioned above, the Safety  Scanner will not start if the executable has expired. If 10 days have passed from when you first downloaded the msert.exe file on your computer, you won’t be able to open it and perform the scan.

In this case, the solution is to re-download Safety Scanner from Microsoft’s official website. But before you download the scanner all over again, make sure the old executable is removed. After you delete it, download the latest version of Safety Scanner from this link (here). Make sure you select the appropriate bit version according to your system architecture and hit the Download button.

Once the download is complete, double-click on msert.exe again and see if it opens without the “side-by-side configuration is incorrect” error. If you’re still encountering the issue, move to Method 2. 

Note: If you plan on scanning your system with Safety Scanner, we recommend going for a Full Scan. This type of scan will uncover most underlying spyware and malware that might have found their way on your system. But keep in mind that it will take over two hours, so make sure you have the time for it.

Method 2: Install or reinstall the Visual C++ redistributable 

The “side-by-side configuration is incorrect” error is sometimes linked with a missing or corrupted C++ redistributable that is used by Safety Scanner. To make sure that’s not the case, let’s make sure you have the relevant C++ redistributable package correctly installed.

Safety Scanner needs the libraries of  Microsoft Visual C++ 2013 redistributable package. Visit this Microsoft official link (here) and download the vcredist executable to our system. Make sure you download the vcredist associated with your system’s architecture.

When the download is complete, open the vcredist executable and install the missing libraries. If you already have Microsoft Visual C++ 2013 installed, hit the Repair button and wait for the package to be reinstalled.

PRO TIP: If the issue is with your computer or a laptop/notebook you should try using the Reimage Plus Software which can scan the repositories and replace corrupt and missing files. This works in most cases, where the issue is originated due to a system corruption. You can download Reimage Plus by Clicking Here

Once you install/reinstall the required Microsoft Visual C++ 2013 redistributable, open msert.exe and see if you’re welcomed by the same error message. If the “side-by-side configuration is incorrect” error message is still there, follow Method 3. 

Method 3: Temporarily disabling SmartScreen (only for Windows 10 and Windows 8)

If you’re on Windows 10 or Windows 8, chances are msert.exe will be prevented from running by Windows SmartScreen. SmartScreen is a tool meant to identify phishing and malware websites and help users make informed decisions about the software they install.

You might be wondering why SmartScreen doesn’t recognize Microsoft’s own software. While no official explanation was provided by Microsoft, it’s possible that it has something to do with the security concerns posed by a hijacked Msert executable.

If you’re certain that the Safety Scanner’s executable isn’t tainted by a malware infection, you can turn off Windows SmartScreen and see if the scanner is able to start. Please follow the guide appropriate to your Windows version.

Windows 10 users with Creator’s Update

If you applied the Creators Update to your Windows 10, the SmartScreen settings are located inside the Windows Defender Security Center interface.

Note: If the steps below don’t lead you to the SmartScreen settings, follow the guide for Windows 8.1.

  1. Click on the start bar (bottom-right corner) and search for Windows Defender Security Center.
  2. Once you’re inside Windows Defender Security Center, click on App & browser control.
  3. Scroll down to Check apps and files and click the Off toggle.
  4. You will be prompted with a User Account Control window. Hit Yes to save the changes.
  5. Run msert.exe again. If it starts without the “side-by-side configuration is incorrect”, initiate the scan and don’t re-enable SmartScreen until the process is complete.
  6. Once the scan is finished and the threat eliminated, return to Windows Defender Security Center and set the SmartScreen to Warn for apps and files.

Windows 8.1 users

On Windows 8.1 and some Windows 10 versions (without the Creator’s U+-update), you can find the Smart Screen options in the Control Panel. Follow the guide below to disable Smart Screen:

  1. Press Windows key + R to open a run window. Type “control panel” and hit Enter to open Control Panel.
  2. In Control Panel, navigate to System and Security and then click on Action Center.
  3. Inside the Action Center, expand the Security section and click on Change settings.
  4. Shortly after that, you should see a Windows SmartScreen dialog box popping up. Select Don’t do anything (turn off Windows SmartScreen) and hit Ok to confirm.
  5. Start Safety Scanner again and let it scan your system. Once the threat has been dealt with, return to the Action center and set Windows SmartScreen back to Get administrator approval before running an unrecognized app from the Internet (recommended).

PRO TIP: If the issue is with your computer or a laptop/notebook you should try using the Reimage Plus Software which can scan the repositories and replace corrupt and missing files. This works in most cases, where the issue is originated due to a system corruption. You can download Reimage Plus by Clicking Here

RECOMMENDED: Click here to fix Windows errors and optimize system performance

Kevin Arrows

Hi! I'm Kevin. Thank you for reading the article above. I am a certified MCTS (Microsoft Certified Technology Specialist) with over 10 years of experience. I love to address tech issues, and write tech how-to's in a way that it can be followed by everyone.

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Fix: Safety Scanner (msert.exe) side-by-side configuration is incorrect

If the issue is with your Computer or a Laptop you should try using the Reimage Plus Software which can scan the repositories and replace corrupt and missing files. This works in most cases, where the issue is originated due to a system corruption. You can download Reimage Plus by clicking the Download button below.

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